Workshops & package demos

0n the Bioconductor Workshop Galaxy

  1. Read the following instructions.
  2. Go to workshop.bioconductor.org.
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  4. Search for the workshop of interest.
  5. Click “Launch” (may take a minute).
  6. Follow text on screen!

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All workshops and demos by level

Beginner

Recommended for starting with Bioconductor.
Session type Title Details Source Youtube
Workshop A Bioconductor-style differential expression analysis powered by SPEAQeasy*

Intermediate

Session type Title Details Source Youtube
Package demo mbQTL: An R/Bioconductor Package for Microbial Quantitative Trait Loci (QTL) Estimation
Package demo Analyzing Spatially-Resolved Transcriptomics Data from Visium using spatialLIBD
Workshop High-Performance Computing in R for Genomic Research**
Workshop Reproducible and programmatic analysis of flow cytometry experiments with the cytoverse**
Package demo Giotto Suite: A multi-scale and technology-agnostic spatial omics analysis framework
Package demo extraChIPs: Detection and Visualisation of Differential ChIP-Seq Signal
Package demo Use R to Create and Execute Reproducible CWL Workflows for Genomic Research
Package demo rGREAT: an R/Bioconductor Package for Functional Enrichment on Genomic Regions
Package demo Epidemiology for Bioinformaticians
Package demo Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
Package demo Tidy genomic and transcriptomic single-cell analyses
Package demo Differential Expression Analysis using Limma and qsvaR
Package demo demuxSNP: supervised demultiplexing of scRNAseq data using cell hashing and SNPs
Package demo A shiny application for single cell RNA-seq visualization
Workshop Voyager: Exploratory spatial data analysis from geospatial to spatial -omics**
Package demo Atlas-scale single-cell multi-sample multi-condition data integration using scMerge2

Advanced

Session type Title Details Source Youtube
Package demo Statial: A Bioconductor package for identifying spatially-related changes in cell state
Package demo Orchestrating Hi-C analysis with Bioconductor
Workshop Bridges from python to Bioconductor: applications in genetics and single-cell genomics**
Workshop Mariner: Explore the Hi-Cs**
Package demo Isoformic: Isoform level biological interpretation from transcriptomic data