Schedule

Wednesday, August 2, 2023

Time (ET) Session Presenting author(s) Title/Event YouTube
07:30 Breakfast Breakfast
08:00 Keynote Introduction
09:00 Keynote Keynote 1
10:00 Short talks track Kinnary Shah
Nicholas J Eagles
Yi Wang
Sowmya Parthiban

Spatial transcriptomics




10:00 Short talks track Brian Schilder
Qian Liu
Jayaram Kancherla
Stefano Mangiola

Infrastructure




10:00 Short talks track Afrooz Razi
Pedro Baldoni
Sonali Arora
Daianna Gonzalez-Padilla

RNA-seq




11:00 Short talks track Xiuwen Zheng
Meghana Kshirsagar
Jae Min Park
Zachary DeBruine

Single-cell




11:00 Package demo Stevie M Pederson extraChIPs: Detection and Visualisation of Differential ChIP-Seq Signal
11:00 Short talks track Nicholas Cheng
Ryan C Thompson
Lauren Marie Harmon
Peter Yizhou Huang

Epigenetics and multi-omics track




12:00 Lunch break Lunch break
13:00 Keynote Keynote 2
14:00 Workshop Arpan Neupane Reproducible and programmatic analysis of flow cytometry experiments with the cytoverse**
14:00 Package demo Louise A. Huuki-Myers Analyzing Spatially-Resolved Transcriptomics Data from Visium using spatialLIBD
14:00 Workshop Jiefei Wang High-Performance Computing in R for Genomic Research**
15:00 Package demo Jiaji George Chen Giotto Suite: A multi-scale and technology-agnostic spatial omics analysis framework
16:00 Break-Networking Break/Networking
16:30 Package demo Mercedeh Movassagh mbQTL: An R/Bioconductor Package for Microbial Quantitative Trait Loci (QTL) Estimation
16:30 Package demo Ellis Patrick Statial: A Bioconductor package for identifying spatially-related changes in cell state
16:30 Package demo Qian Liu Use R to Create and Execute Reproducible CWL Workflows for Genomic Research
Workshop/demo levels: * - beginner, recommended for starting with Bioconductor; ** - intermediate; *** - advanced.

Thursday, August 3, 2023

Time (ET) Session Presenting author(s) Title/Event YouTube
08:00 Breakfast Breakfast
08:30 Keynote Keynote 3
09:30 Short talks track Jared T Brown
Harkirat Kaur Sohi
Peiying Cai
Shiheng Huang

Spatial transcriptomics




09:30 Short talks track Sara Stankiewicz
Janani Ravi
Natasha Gurevich


Cancer, Evolution




09:30 Package demo Jacques Serizay Orchestrating Hi-C analysis with Bioconductor
10:30 Birds of a Feather J Wokaty Cloud Methods
10:30 Package demo Zuguang Gu rGREAT: an R/Bioconductor Package for Functional Enrichment on Genomic Regions
10:30 Birds of a Feather Maria Doyle Bioconductor Carpentries global teaching program
11:30 Awards Awards
12:00 Lunch break Lunch break
13:00 Keynote Keynote 4
14:00 Package demo Chloe Anya Mirzayi Epidemiology for Bioinformaticians
14:00 Workshop Daianna Gonzalez-Padilla A Bioconductor-style differential expression analysis powered by SPEAQeasy*
14:00 Workshop Vincent James Carey Bridges from python to Bioconductor: applications in genetics and single-cell genomics**
15:00 Package demo Marcel Ramos Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
16:00 Break-Networking Break/Networking
16:30 Birds of a Feather Outreachy
16:30 Birds of a Feather Bioconductor and the Latin American Bioinformatics Landscape: Challenges and Opportunities
16:30 Short talks track Noor Pratap Singh
Molly Martorella
Matt McCall
Sean Maden
Jean-Philippe Fortin
RNA-seq




17:30 Posters Poster session
Workshop/demo levels: * - beginner, recommended for starting with Bioconductor; ** - intermediate; *** - advanced.

Friday, August 4, 2023

Time (ET) Session Presenting author(s) Title/Event YouTube
08:00 Breakfast Breakfast
08:30 Keynote Keynote 5
09:30 Short talks track Ahmad Al Ajami
Phillip Nicol
Yichen Wang
Jill Lundell

Single-cell




09:30 Short talks track Mengbo Li
Simone Tiberi
Samuel David Gamboa-Tuz
Leo M Lahti

Microbiome, Proteomics




09:30 Package demo Stefano Mangiola Tidy genomic and transcriptomic analyses
10:30 Package demo Hedia Tnani Differential Expression Analysis using Limma and qsvaR
10:30 Package demo Michael P Lynch demuxSNP: supervised demultiplexing of scRNAseq data using cell hashing and SNPs
10:30 Short talks track Alexandru Mahmoud
Lucas Schiffer
Sehyun Oh
Zuguang Gu

Infrastructure




12:00 Lunch break Lunch break
13:00 Keynote Keynote 6
14:00 Package demo Jianhong Ou A shiny application for single cell RNA-seq visualization
14:00 Workshop Lambda Moses Voyager: Exploratory spatial data analysis from geospatial to spatial -omics***
14:00 Workshop Eric Scott Davis Mariner: Explore the Hi-Cs**
16:00 Package demo Yingxin Lin Atlas-scale single-cell multi-sample multi-condition data integration using scMerge2
16:00 Package demo Izabela Mamede Conceição Isoformic: Isoform level biological interpretation from transcriptomic data
Workshop/demo levels: * - beginner, recommended for starting with Bioconductor; ** - intermediate; *** - advanced.